• 
  Lotfi Slim, Clement Chatelain, Jean-Philippe Vert, Chloé-Agathe Azencott. Novel Methods for Epistasis Detection in Genome-Wide Association Studies. PLoS ONE, Public Library of Science, 2020, 15 (11), pp.e0242927. ⟨10.1371/journal.pone.0242927⟩. ⟨hal-01984919v2⟩
• 
  Alessandra Meddis. Inference and validation of prognostic marker for correlated survival data with application to cancer. Cancer. Université Paris-Saclay, 2020. English. ⟨NNT : 2020UPASR005⟩. ⟨tel-03106118⟩
• 
  Andrea Checcoli, Jonathan Pol, Aurelien Naldi, Vincent Noël, Emmanuel Barillot, et al.. Dynamical Boolean Modeling of Immunogenic Cell Death. Frontiers in Physiology, Frontiers, 2020, 11, pp.590479. ⟨10.3389/fphys.2020.590479⟩. ⟨hal-03050475⟩
• 
  Samuel Collombet, Noemie Ranisavljevic, Takashi Nagano, Csilla Varnai, Tarak Shisode, et al.. Parental-to-embryo switch of chromosome organization in early embryogenesis. Nature, Nature Publishing Group, 2020, 580, pp.142 - 146. ⟨10.1038/s41586-020-2125-z⟩. ⟨hal-03027197⟩
• 
  Sylvie Rodrigues-Ferreira, Anne Nehlig, Hadia Moindjie, Clarisse Monchecourt, Cynthia Seiler, et al.. Improving breast cancer sensitivity to paclitaxel by increasing aneuploidy. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2019, 116 (47), pp.23691-23697. ⟨10.1073/pnas.1910824116⟩. ⟨hal-02411561⟩
• 
  Sophie Vacher, Voreak Suybeng, Élodie Girard, Julien Masliah Planchon, Grégory Thomson, et al.. Genomic Instability Signature of Palindromic Non-Coding Somatic Mutations in Bladder Cancer. Cancers, MDPI, 2020, 12 (10), pp.2882. ⟨10.3390/cancers12102882⟩. ⟨hal-03011747⟩
• 
  Alice Schoenauer Sebag, Sandra Plancade, Céline Raulet-Tomkiewicz, Robert Barouki, Jean-Philippe Vert, et al.. Infering an ontology of single cell motions from high-throughput microscopy data. IEEE 12th International Symposium on Biomedical Imaging, Apr 2015, New York, United States. pp.4, ⟨10.1109/ISBI.2015.7163840⟩. ⟨hal-02742630⟩
• 
  Racha Chouaib, Adham Safieddine, Xavier Pichon, Arthur Imbert, Oh Sung Kwon, et al.. A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting. Developmental Cell, Elsevier, 2020, 54, pp.773 - 791.e5. ⟨10.1016/j.devcel.2020.07.010⟩. ⟨pasteur-02925687⟩
• 
  Juliette Coignard. Nouvelles stratégies pour l’étude des facteurs génétiques impliqués dans le cancer du sein familial. Santé publique et épidémiologie. Université Paris Saclay (COmUE), 2019. Français. ⟨NNT : 2019SACLS426⟩. ⟨tel-03005974⟩
• 
  Andrei Zinovyev, Urszula Czerwinska, Laura Cantini, Emmanuel Barillot, Klaus Frahm, et al.. Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network. PLoS Computational Biology, Public Library of Science, 2020, ⟨10.1371/journal.pcbi.1007652⟩. ⟨hal-02114063⟩
• 
  Thomas Walter. Bioimage Informatics for Phenomics. Bioinformatics [q-bio.QM]. Sorbonne Université, 2020. ⟨tel-02981391⟩
• 
  Joseph Boyd, Zelia Gouveia, Franck Perez, Thomas Walter. EXPERIMENTALLY-GENERATED GROUND TRUTH FOR DETECTING CELL TYPES IN AN IMAGE-BASED IMMUNOTHERAPY SCREEN. 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), Apr 2020, Iowa City, United States. pp.886-890, ⟨10.1109/ISBI45749.2020.9098696⟩. ⟨hal-02976141⟩
• 
  Sergey Golovenkin, Jonathan Bac, Alexander Chervov, Evgeny Mirkes, Yuliya Orlova, et al.. Trajectories, bifurcations and pseudotime in large clinical datasets: applications to myocardial infarction and diabetes data. GigaScience, BioMed Central, In press, ⟨10.5524/100819⟩. ⟨hal-02972281⟩
• 
  Jonathan Bac, Andrei Zinovyev. Local intrinsic dimensionality estimators based on concentration of measure. 2020 International Joint Conference on Neural Networks (IJCNN), Jul 2020, Glasgow, United Kingdom. pp.1-8, ⟨10.1109/IJCNN48605.2020.9207096⟩. ⟨hal-02972293⟩
• 
  Marie-Ming Aynaud, Olivier Mirabeau, Nadege Gruel, Sandrine Grossetête, Valentina Boeva, et al.. Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution. Cell Reports, Elsevier Inc, 2020, 30 (6), pp.1767-1779.e6. ⟨10.1016/j.celrep.2020.01.049⟩. ⟨hal-02972224⟩
• 
  Luca Albergante, Evgeny Mirkes, Jonathan Bac, Huidong Chen, Alexis Martin, et al.. Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph. Entropy, MDPI, 2020, 22 (3), pp.296. ⟨10.3390/e22030296⟩. ⟨hal-02971955⟩
• 
  Mihály Koltai, Vincent Noël, Andrei Zinovyev, Laurence Calzone, Emmanuel Barillot. Exact solving and sensitivity analysis of stochastic continuous time Boolean models. BMC Bioinformatics, BioMed Central, 2020, 21 (1), pp.241. ⟨10.1186/s12859-020-03548-9⟩. ⟨inserm-02971389⟩
• 
  Joseph Boyd. Deep learning for computational phenotyping in cell-based assays. Bioinformatics [q-bio.QM]. Université Paris sciences et lettres, 2020. English. ⟨NNT : 2020UPSLM008⟩. ⟨tel-02928984⟩
• 
  Stéphanie Chevalier, Vincent Noël, Laurence Calzone, Andrei Zinovyev, Loïc Paulevé. Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision. 18th International Conference on Computational Methods in Systems Biology (CMSB), 2020, Online, Germany. pp.193--209, ⟨10.1007/978-3-030-60327-4_11⟩. ⟨hal-02898849v2⟩
• 
  Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman Malik Sheriff, Cristina Casals-Casas, et al.. Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings in Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bib/bbaa046⟩. ⟨hal-02549796⟩

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